The Supreme Court clarifies the application of the 120-day period for VAT refund claims, particularly regarding the exception created by BIR Ruling No. DA-489-03. The court emphasizes that taxpayers who filed judicial claims within the “window period” between December 10, 2003, and October 6, 2010, can benefit from this ruling, even if they did not explicitly invoke it in their pleadings. This decision ensures equitable treatment for taxpayers who relied on the BIR’s interpretation before its reversal.
The VAT Refund Saga: Can Taxpayers Rely on a Forgotten Ruling?
This case revolves around San Roque Power Corporation’s attempt to secure a refund for unutilized input VAT related to zero-rated sales of electricity to the National Power Corporation (NPC) for the year 2004. The core legal question is whether San Roque’s judicial claims, filed prematurely before the expiration of the 120-day period for the Commissioner of Internal Revenue (CIR) to act on their administrative claims, should be dismissed for lack of jurisdiction. The controversy stems from conflicting interpretations of Section 112(D) of the National Internal Revenue Code (NIRC) and the impact of a prior BIR ruling.
The facts reveal that San Roque filed administrative claims for refund on December 22, 2005, and February 27, 2006. However, dissatisfied with the CIR’s inaction, San Roque filed petitions for review with the Court of Tax Appeals (CTA) on March 30, 2006, and June 20, 2006, before the 120-day period had lapsed. The CTA Division initially granted a partial refund, but the CTA En Banc reversed this decision, citing the premature filing of the judicial claims. The En Banc relied on Section 112(D) of the NIRC, which prescribes a 120-day period for the CIR to process refund claims and a subsequent 30-day period for taxpayers to appeal to the CTA after a denial or inaction by the CIR.
At the heart of the matter is the interpretation of Section 112(D) of the NIRC, which states:
SEC. 112. Refunds or Tax Credits of Input Tax. –
(D) Period within which Refund or Tax Credit of Input Taxes shall be Made. – In proper cases, the Commissioner shall grant a refund or issue the tax credit certificate for creditable input taxes within one hundred twenty (120) days from the date of submission of complete documents in support of the application filed in accordance with Subsections (A) and (B) hereof:
In case of full or partial denial of the claim tor tax refund or tax credit, or the failure on the part of the Commissioner to act on the application within the period prescribed above, the taxpayer affected may, within thirty (30) days from the receipt of the decision denying the claim or after the expiration of the one hundred twenty-day period, appeal the decision or the unacted claim with the Court of Tax Appeals.
The CIR argued that San Roque’s failure to exhaust administrative remedies by waiting for the 120-day period to expire before seeking judicial recourse was fatal to its claim. San Roque countered that, at the time of filing, prevailing CTA rulings allowed judicial claims to be filed within the two-year prescriptive period, regardless of the 120-day period. They further argued against the retroactive application of the Supreme Court’s ruling in Commissioner of Internal Revenue v. Aichi Forging Company of Asia, Inc. (Aichi), which established the mandatory nature of the 120-day period.
The Supreme Court acknowledged the Aichi ruling, which affirmed the mandatory and jurisdictional nature of the 120-day period. However, the Court also recognized an exception based on BIR Ruling No. DA-489-03, issued on December 10, 2003, which stated that “a taxpayer-claimant need not wait for the lapse of the 120-day period before it could seek judicial relief with the CTA by way of a Petition for Review.” The Court emphasized the principle of equitable estoppel, enshrined in Section 246 of the NIRC, which prevents the BIR from retroactively applying a reversal of a ruling to the detriment of taxpayers who relied on it in good faith.
Building on this principle, the Court clarified the doctrines in Aichi and San Roque, establishing a “window period” from December 10, 2003, to October 6, 2010 (the date of promulgation of Aichi), during which taxpayers could file judicial claims without waiting for the 120-day period to expire. Since San Roque filed its judicial claims within this window period, the Court held that the CTA had jurisdiction to hear the case.
A critical aspect of the decision is the Court’s stance on whether taxpayers must specifically invoke BIR Ruling No. DA-489-03 to benefit from it. The Court resolved that the benefits of the ruling extend to all taxpayers who filed their judicial claims within the window period, regardless of whether they specifically invoked the ruling in their pleadings. This is because BIR Ruling No. DA-489-03 is a general interpretative rule applicable to all taxpayers.
The Court referenced the previous case of Commissioner of Internal Revenue v. Air Liquide Philippines. Inc., stating:
The Court agrees with ALPI in its survey of cases which shows that BIR Ruling No. DA-489-03 was applied even though the taxpayer did not specifically invoke the same. As long as the judicial claim was filed between December 10, 2003 and October 6, 2010, then the taxpayer would not be required to wait for the lapse of 120-day period. This doctrine has been consistently upheld in the recent decisions of the Court.
The Supreme Court granted San Roque’s petition, reversed the CTA En Banc’s decision, and reinstated the CTA Division’s decision, ordering the CIR to refund or issue a tax credit certificate to San Roque for the unutilized input VAT.
FAQs
What was the key issue in this case? | The key issue was whether San Roque Power Corporation’s judicial claims for VAT refund were prematurely filed, considering the 120-day period for the CIR to act on administrative claims and the impact of BIR Ruling No. DA-489-03. |
What is the 120-day rule? | The 120-day rule refers to the period within which the CIR must act on a taxpayer’s administrative claim for VAT refund. Taxpayers generally must wait for this period to expire before filing a judicial claim with the CTA. |
What is BIR Ruling No. DA-489-03? | BIR Ruling No. DA-489-03 stated that taxpayers did not need to wait for the 120-day period to lapse before seeking judicial relief with the CTA. This ruling created an exception to the general rule. |
What is the “window period”? | The “window period” is the period between December 10, 2003 (issuance of BIR Ruling No. DA-489-03) and October 6, 2010 (promulgation of the Aichi ruling), during which taxpayers could file judicial claims without waiting for the 120-day period to expire. |
Did San Roque file its judicial claim within the window period? | Yes, San Roque filed its judicial claims on March 30, 2006, and June 20, 2006, which falls within the window period between December 10, 2003, and October 6, 2010. |
Did San Roque invoke BIR Ruling No. DA-489-03 in its pleadings? | No, San Roque did not specifically invoke BIR Ruling No. DA-489-03 in its pleadings before the CTA. |
Did the Court consider San Roque’s failure to invoke BIR Ruling No. DA-489-03 as a bar to its claim? | No, the Court held that the benefits of BIR Ruling No. DA-489-03 extended to all taxpayers who filed their judicial claims within the window period, regardless of whether they specifically invoked the ruling. |
What was the effect of the Supreme Court’s ruling? | The Supreme Court reversed the CTA En Banc’s decision and reinstated the CTA Division’s decision, ordering the CIR to refund or issue a tax credit certificate to San Roque for the unutilized input VAT. |
In conclusion, the Supreme Court’s decision in San Roque Power Corporation v. Commissioner of Internal Revenue clarifies the application of the 120-day rule for VAT refund claims and provides guidance on the “window period” exception created by BIR Ruling No. DA-489-03. The decision ensures equitable treatment for taxpayers who relied on the BIR’s interpretation before its reversal and underscores the importance of consistency and predictability in tax regulations.
For inquiries regarding the application of this ruling to specific circumstances, please contact ASG Law through contact or via email at frontdesk@asglawpartners.com.
Disclaimer: This analysis is provided for informational purposes only and does not constitute legal advice. For specific legal guidance tailored to your situation, please consult with a qualified attorney.
Source: San Roque Power Corporation vs. Commissioner of Internal Revenue, G.R. No. 203249, July 23, 2018