The Supreme Court clarified the mandatory periods for claiming value-added tax (VAT) refunds, establishing that taxpayers generally must wait 120 days for the Commissioner of Internal Revenue (CIR) to decide on their claim before appealing to the Court of Tax Appeals (CTA). However, an exception was carved out for claims filed between December 10, 2003, and October 6, 2010, due to a prior BIR ruling that allowed earlier judicial recourse. This decision provides critical guidance for businesses seeking VAT refunds, emphasizing adherence to statutory timelines while acknowledging the impact of official BIR interpretations.
The Case of Premature Appeals: When Can a Taxpayer Seek Judicial Relief?
Visayas Geothermal Power Company, Inc. (VGPCI), engaged in power generation and sales, sought a refund for unutilized input VAT payments after its sales became zero-rated due to Republic Act No. 9136. After the Bureau of Internal Revenue (BIR) failed to act on their claims, VGPCI filed petitions for review before the CTA. The Commissioner of Internal Revenue (CIR) argued that VGPCI’s petitions were premature because they were filed before the end of the 120-day period granted to the CIR to decide the claim under Section 112(D) of the National Internal Revenue Code (NIRC). The central legal question revolves around whether VGPCI observed the proper prescriptive period required by law for filing an appeal before the CTA.
The CIR argued that VGPCI should have awaited the CIR’s decision or the lapse of the 120-day period, as stipulated in Section 112(D) of the NIRC. VGPCI countered that Section 112(D) is a mandate for the CIR, not a limitation on the taxpayer, and that Section 229 of the NIRC provides the prescriptive period for filing an appeal. VGPCI also cited jurisprudence stating that taxpayers need not wait for the BIR’s decision if the two-year prescriptive period is about to expire. The company insisted that it is imperative for both administrative and judicial claims to be filed within the two-year prescriptive period, regardless of the administrative claim’s pendency with the CIR.
The Supreme Court addressed the applicability of Section 229 of the NIRC. The Court clarified that Section 229 pertains only to taxes erroneously or illegally collected. The relevant provision for claiming a refund or tax credit for unutilized creditable input VAT is Section 112(A), which states:
SEC. 112. Refunds or Tax Credits of Input Tax.
(A) Zero-rated or Effectively Zero-rated Sales. – any VAT-registered person, whose sales are zero-rated or effectively zero-rated may, within two (2) years after the close of the taxable quarter when the sales were made, apply for the issuance of a tax credit certificate or refund of creditable input tax due or paid attributable to such sales
The Court emphasized the significance of the 120-day period granted to the CIR to act on applications for tax refunds or tax credits under Section 112(D). Section 112(D) of the NIRC stipulates:
(D) Period Within Which Refund or Tax Credit of Input Taxes Shall be Made. – In proper cases, the Commissioner shall grant a refund or issue the tax credit certificate for creditable input taxes within one hundred twenty (120) days from the date of submission of complete documents in support of the application filed in accordance with Subsections (A) and (B) hereof.
In case of full or partial denial of the claim for tax refund or tax credit, or the failure on the part of the Commissioner to act on the application within the period prescribed above, the taxpayer affected may, within thirty (30) days from the receipt of the decision denying the claim or after the expiration of the one hundred twenty day-period, appeal the decision or the unacted claim with the Court of Tax Appeals.
The Supreme Court affirmed that the CTA’s jurisdiction over the CIR’s decisions or inaction is appellate. This requires the prior filing of an administrative case before the CIR. The CTA can only acquire jurisdiction after the CIR has rendered its decision or after the lapse of the period of action provided in the Tax Code. In cases where the CIR fails to act, such inaction is considered a denial.
In the case of Commissioner of Internal Revenue v. Aichi Forging Company of Asia, Inc., the Court further elaborated on the mandatory nature of the 120-day period. The Court explained:
Section 112(D) of the NIRC clearly provides that the CIR has “120 days, from the date of the submission of the complete documents in support of the application [for tax refund/credit],” within which to grant or deny the claim. In case of full or partial denial by the CIR, the taxpayer’s recourse is to file an appeal before the CTA within 30 days from receipt of the decision of the CIR. However, if after the 120-day period the CIR fails to act on the application for tax refund/credit, the remedy of the taxpayer is to appeal the inaction of the CIR to CTA within 30 days.
The court acknowledged the existence of BIR Ruling No. DA-489-03 dated December 10, 2003, which allowed for filing a judicial claim without waiting for the end of the 120-day period. As the court stated in Commissioner of Internal Revenue v. San Roque Power Corporation
BIR Ruling No. DA-489-03 does provide a valid claim for equitable estoppel under Section 246 of the Tax Code. BIR Ruling No. DA-489-03 expressly states that the “taxpayer-claimant need not wait for the lapse of the 120-day period before it could seek judicial relief with the CTA by way of Petition for Review.”
Therefore, an exception was made for judicial claims filed from December 10, 2003, until the promulgation of Aichi on October 6, 2010. During this period, a judicial claim for refund could be filed with the CTA even before the lapse of the 120-day period given to the BIR to decide on the administrative case. The court then summarized the rules for filing a claim for refund or tax credit of unutilized input credit VAT:
- The taxpayer has two years after the close of the taxable quarter when the relevant sales were made to file an administrative claim before the CIR for a refund of the creditable input tax or the issuance of a tax credit certificate.
- The CIR has 120 days from the date of the submission of complete documents to act on the application.
- If the CIR denies the application or fails to act within 120 days, the taxpayer has 30 days from receipt of the decision or from the lapse of the 120-day period to appeal to the CTA, but not before the 120-day period expires.
- The two-year period in Section 229 of the NLRC does not apply to appeals filed before the CTA related to claims under Section 112.
- Following San Roque, the 120+30 day period is mandatory and jurisdictional from January 1, 1998, but from December 10, 2003, until October 6, 2010, judicial claims need not follow this period.
Applying these rules, the judicial claim filed on September 30, 2003, was prematurely filed. The judicial claim filed on December 19, 2003, after the issuance of BIR Ruling DA-489-03, could be considered despite its early filing.
FAQs
What is the main issue in this case? | The central issue is whether Visayas Geothermal Power Company, Inc. (VGPCI) prematurely filed its petitions for review before the Court of Tax Appeals (CTA) by not waiting for the 120-day period for the Commissioner of Internal Revenue (CIR) to act on its refund claims. |
What is the 120+30 day rule? | The 120+30 day rule refers to the period where the CIR has 120 days to decide on a tax refund application, and if the CIR denies or fails to act, the taxpayer has 30 days to appeal to the CTA. |
When is the 120+30 day rule mandatory? | The 120+30 day rule is mandatory and jurisdictional from January 1, 1998, following the effectivity of the 1997 Tax Code, and again after October 6, 2010, subsequent to the Aichi ruling. |
What is the exception to the 120+30 day rule? | The exception applies to judicial claims filed between December 10, 2003 (issuance of BIR Ruling No. DA 489-03), and October 6, 2010 (promulgation of Aichi), during which judicial claims could be filed even before the 120-day period lapsed. |
What NIRC provision governs VAT refunds? | Section 112 of the National Internal Revenue Code (NIRC) governs VAT refunds, specifically addressing the conditions and timelines for claiming refunds or tax credits of input tax. |
What was BIR Ruling No. DA-489-03? | BIR Ruling No. DA-489-03 was a ruling that allowed taxpayers to file a judicial claim for a VAT refund without waiting for the lapse of the 120-day period for the CIR to decide on the administrative claim. |
What did the Supreme Court decide in this case? | The Supreme Court partly granted the petition, reversing the CTA’s decision for CTA Case No. 6790 (filed prematurely) and remanding CTA Case No. 6838 for proper determination of the refundable amount, acknowledging it was filed under the exception period. |
What is equitable estoppel in this context? | Equitable estoppel, in this context, refers to the principle that the BIR cannot retroactively apply a reversal of a prior ruling (like BIR Ruling No. DA-489-03) to the detriment of taxpayers who relied on that prior ruling in good faith. |
This case underscores the importance of adhering to the prescribed timelines for VAT refund claims while also recognizing the impact of official interpretations issued by the BIR. Taxpayers should be aware of the specific periods and exceptions to ensure timely and valid claims for VAT refunds.
For inquiries regarding the application of this ruling to specific circumstances, please contact ASG Law through contact or via email at frontdesk@asglawpartners.com.
Disclaimer: This analysis is provided for informational purposes only and does not constitute legal advice. For specific legal guidance tailored to your situation, please consult with a qualified attorney.
Source: THE COMMISSIONER OF INTERNAL REVENUE vs. VISAYAS GEOTHERMAL POWER COMPANY, INC., G.R. No. 181276, November 11, 2013